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Information Theoretics Based Sequence Pattern Discriminant Algorithms: Applications in Bioinformatic Data Mining - Tomas Arredondo

English
2010-01-07
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This work refers to studies on information-theoretic (IT) aspects of data-sequence patterns and developing discriminant algorithms that enable distinguishing the features of underlying sequence patterns having characteristic, inherent stochastical attributes. Considered in this research are specific details on information-theoretics and entropy considerations vis-á-vis sequence patterns (having stochastical ... Full description

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Description

This work refers to studies on information-theoretic (IT) aspects of data-sequence patterns and developing discriminant algorithms that enable distinguishing the features of underlying sequence patterns having characteristic, inherent stochastical attributes. Considered in this research are specific details on information-theoretics and entropy considerations vis-á-vis sequence patterns (having stochastical attributes) such as DNA sequences of molecular biology. Applying information-theoretic concepts (essentially in Shannon''s sense), the following distinct sets of metrics are developed and applied in the algorithms developed for data-sequence pattern-discrimination applications: (i) Divergence or cross-entropy algorithms of Kullback-Leibler type and of general Czizár class; (ii) statistical distance measures; (iii) ratio-metrics; (iv) Fisher type linear-discriminant measure; (v) complexity metric based on information redundancy; and a Fuzzy logic based measure. Relevant algorithms are used to test DNA sequences of human and some bacterial organisms.

More Information

Author Tomas Arredondo
Publisher LAP LAMBERT Academic Publishing
Release year 2010
Cover type Softcover
EAN 9783838337104
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€90.96 €113.70